Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses
نویسندگان
چکیده
منابع مشابه
Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses
UNLABELLED We developed a modular and scalable framework called Eoulsan, based on the Hadoop implementation of the MapReduce algorithm dedicated to high-throughput sequencing data analysis. Eoulsan allows users to easily set up a cloud computing cluster and automate the analysis of several samples at once using various software solutions available. Our tests with Amazon Web Services demonstrate...
متن کاملHigh Throughput Landmark Based Image Registration Using Cloud Computing
Cloud computing provides an elastic, as-a-Service resource abstraction with a usage-based payment model, and is emerging as an attracting computing paradigm. This is especially true for computing intensive application workflows with high-throughput requirements, such as those involving large-scale image datasets. In this paper, we investigate the usage of cloud computing to support a medical im...
متن کاملDDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data
High-performance next-generation sequencing (NGS) technologies are advancing genomics and molecular biological research. However, the immense amount of sequence data requires computational skills and suitable hardware resources that are a challenge to molecular biologists. The DNA Data Bank of Japan (DDBJ) of the National Institute of Genetics (NIG) has initiated a cloud computing-based analyti...
متن کاملA MR Simulator in Facilitating Cloud Computing
MapReduce is an enabling technology in support of Cloud Computing. Hadoop which is a mapReduce implementation has been widely used in developing MapReduce applications. This paper presents Hadoop simulatorHaSim, MapReduce simulator which builds on top of Hadoop. HaSim models large number of parameters that can affect the behaviors of MapReduce nodes, and thus it can be used to tune the performa...
متن کاملGenOO: A Modern Perl Framework for High Throughput Sequencing analysis
Background: High throughput sequencing (HTS) has become one of the primary experimental tools used to extract genomic information from biological samples. Bioinformatics tools are continuously being developed for the analysis of HTS data. Beyond some well-defined core analyses, such as quality control or genomic alignment, the consistent development of custom tools and the representation of seq...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2012
ISSN: 1460-2059,1367-4803
DOI: 10.1093/bioinformatics/bts165